先進ゲノム解析研究推進プラットフォーム

成果論文一覧

支援による成果を含む論文一覧

支援による成果を含む論文として支援依頼者から報告があった論文を発表の新しい順に並べました。成果論文には「先進ゲノム支援」の課題番号を謝辞に入れることをお願いしていますが、現状は以下も含めています。
＊：旧「ゲノム支援」の支援成果も含まれており、そちらの課題番号のみが記載されたもの、あるいは課題番号の記載はないが、支援成果が含まれているもの

  1. Kohei OHNISHI, Natsune TAKAGAKI, Misaki OKAHATA, Mayu FUJITA, Akane OHTA, Atsushi KUHARA. Molecular and Cellular Network Systems Underlying Cold Tolerance of Caenorhabditis elegans. Cryobiology and Cryotechnology, in press, 2018.
  2. Mayu Fujita, Kohei Ohnishi, Akane Ohta, Atsushi Kuhara. Tissue network underlying cold tolerance. 細胞, in press, 2018.
  3. Ishiguro S, Galipon J, Ishii R, Suzuki Y, Kondo S, Okada-Hatakeyama M, Tomita M, Ui-Tei K. Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzyme ADAR1-p110 and ADAR2. RNA Biology, in press, 2018. ＊
  4. Galipon J, Ishii R, Ishiguro S, Suzuki Y, Kondo S, Okada-Hatakeyama M, Tomita M, Ui-Tei K. High-quality overlapping paired-end reads for the detection of A-to-I editing on small RNA. Methods Mol. Biol., in press, 2018. ＊
  5. Fratta P, Sivakumar P, Humphrey J, Lo K, Ricketts T, Oliveira H, Brito JM, Kalmar B, Ule A, Yu Y, Birsa N, Bodo C, Collins T, Conicella AE, Stewart M, Mianne J, Corrochano S, Emmett W, Codner G, Groves M, Fukumura R, Gondo Y, Lythgoe M, Pauws E, Peskett E, Stanier P, Teboul L, Hallegger M, Isaacs AM, Fawzi NL, Wang E, Housman DE, Baralle FE, Greensmith L, Buratti E, Plagnol V, Fisher EM, Acevedo A. Mice with endogenous TDP-43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis. EMBO Journal, in press, 2018. doi：10.15252/embj.201798684 ＊
  6. Dawn E. Barnes, Eichi Watabe, Kanako Ono, Euiyoung Kwak, Hidehito Kuroyanagi, Shoichiro Ono. Tropomyosin isoforms differentially affect muscle contractility in the head and body regions in the nematode Caenorhabditis elegans. Mol Biol Cell, 2018. doi：10.1091/mbc.E17-03-0152 ＊
  7. Darin Lanjakornsiripan, Baek-Jun Pior, Daichi Kawaguchi, Shohei Furutachi, Tomoaki Tahara, Yu Katsuyama, Yutaka Suzuki, Yugo Fukazawa & Yukiko Gotoh. Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers. Nature Communications, 9, 1623, 2018. doi：10.1038/s41467-018-03940-3
  8. Kudoh T., M. Takahashi, T. Osabe, A. Toyoda, H. Hirakawa, Y. Suzuki, N. Ohmido, Y. Onodera. Molecular insights into the non-recombining nature of the spinach male-determining region. Molecular Genetics and Genomics, 293(2), 557-568, 2018. doi：10.1007/s00438-017-1405-2
  9. Akahira-Azuma M, Tsurusaki Y, Enomoto Y, Mitsui J, Kurosawa K. Refining the clinical phenotype of Okur-Chung neurodevelopmental syndrome. Hum Genome Var., 5, 18011, 2018. doi：10.1038/hgv.2018.11 ＊
  10. Tano K, Onoguchi-Mizutani R, Yeasmin F, Uchiumi F, Suzuki Y, Yada T, Akimitsu N. Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells. Front Genet., 8, 208, 2018. eCollection 2017. doi：10.3389/fgene.2017.00208 ＊
  11. Sarun Sereewattanawoot, Ayako Suzuki, Masahide Seki, Yoshitaka Sakamoto, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara & Yutaka Suzuki. Identification of potential regulatory mutations using multi-omics analysis and haplotyping of lung adenocarcinoma cell lines. Scientific Reports, 8(1), 4926, 2018. doi：10.1038/s41598-018-23342-1
  12. Aoki H, Yamamoto E, Yamano HO, Sugai T, Kimura T, Tanaka Y, Matsushita HO, Yoshikawa K, Takagi R, Harada E, Nakaoka M, Yoshida Y, Harada T, Sudo G, Eizuka M, Yorozu A, Kitajima H, Niinuma T, Kai M, Nojima M, Suzuki H, Nakase H. Subtypes of the Type II Pit Pattern Reflect Distinct Molecular Subclasses in the Serrated Neoplastic Pathway. Dig Dis Sci., 2018. doi: 10.1007/s10620-018-5016-5. ＊
  13. Hamaji, T., Kawai-Toyooka,H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima,S., Umen, J. G. And Nozaki, H. Anisogamy evolved with a reduced sex-determining region in volvocine green algae. Communications Biology, 1, 17, 2018. doi：10.1038/s42003-018-0019-5 ＊
    (プレスリリース）http://www.s.u-tokyo.ac.jp/ja/info/5786/
  14. Kurotaki D, Nakabayashi J, Nishiyama A, Sasaki H, Kawase W, Kaneko N, Ochiai K, Igarashi K, Ozato K, Suzuki Y, Tamura T. Transcription factor IRF8 governs enhancer landscape dynamics in mononuclear phagocyte progenitors, Cell Reports, 22, 2628-2641, 2018. doi：10.1016/j.celrep.2018.02.048
    (プレスリリース）https://www.yokohama-cu.ac.jp/amedrc/news/20180307Kurotaki.html
  15. Cui S, Wada S, Tobimatsu Y, Takeda Y, Saucet SB, Takano T, Umezawa T, Shirasu K, Yoshida S. Host lignin composition affects haustorium induction in the parasitic plants Phtheirospermum japonicum and Striga hermonthica., New Phytol., 218, 710-723, 2018. doi：10.1111/nph.15033 ＊
  16. Sakai E, Nakayama M, Oshima H, Kouyama Y, Niida A, Fujii S, Ochiai A, Nakayama KI, Mimori K, Suzuki Y, Hong CP, Ock CY, Kim SJ, and Oshima M. Combined mutation of Apc, Kras and Tgfbr2 effectively drives metastasis of intestinal cancer. Cancer Research, 78, 1334-1346, 2018. doi：10.1158/0008-5472.CAN-17-3303.
  17. Takahashi Y, Saito A, Chiba H, Kuronuma K. Ikeda K. Kobayashi T, Ariki S, Takahashi M, Sasaki Y, Takahashi H. Impaired diversity of the lung microbiome predicts progression of idiopathic pulmonary fibrosis. Respir Res, 34, 2018. doi: 10.1186/s12931-018-0736-9 ＊
  18. Kashima Y, Suzuki A, Liu Y, Hosokawa M, Matsunaga H, Shirai M, Arikawa K, Sugano S, Kohno T, Takeyama H, Tsuchihara K, Suzuki Y. Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response. Scientific Reports, 8, 3482, 2018. doi: 10.1038/s41598-018-21161-y
  19. Yamaguchi T, Suzuki T, Sato T, Takahashi A, Watanabe H, Kadowaki A, Natsui M, Inagaki H, Arakawa S, Nakaoka S, Koizumi Y, Seki S, Adachi S, Fukao A, Fujiwara T, Natsume T, Kimura A, Komatsu M, Shimizu S, Ito H, Suzuki Y, Penninger JM, Yamamoto T, Imai Y, Kuba K. The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function. Science Signaling, 11(516) eaan3638, 2018. doi：10.1126/scisignal.aan3638
    (プレスリリース）http://www.akita-u.ac.jp/honbu/event/img/pro30655_01_dl.pdf
  20. Steward O, Matsudaira-Yee K, Rarris S, Salgado-Pirbhoy P, Worely P, Okamura K, Okuno H, Bito H. Delayed degradation and impaired dendritic delivery of intron-lacking EGFP-Arc/Arg3.1 mRNA in EGFP-Arc transgenic mice. Front Mol Neurosci, 10, 435, 2018. doi：10.3389/fnmol.2017.00435 ＊
  21. Masuda S, Suzuki Y, Fujitani Y, Mitsui R, Nakagawa T, Shintani M, Tani A. Lanthanide-dependent regulation of methylotrophy in Methylobacterium aquatic strain 22A. mSphere, 3, e00462-17, 2018. doi：10.1128/mSphere.00462-17 ＊
  22. Takahashi S, Fukushima N, Osabe K, Itabashi E, Shimizu M, Miyaji N, Takasaki-Yasuda T, Suzuki Y, Seki M, Fujimoto R. Identification of DNA methylated regions by using methylated DNA immunoprecipitation sequencing in Brassica rapa. Crop & Pasture Science, 69, 107-120, 2018. doi：10.1071/CP17394 ＊
  23. Suzuki A, Kawano S, Mitsuyama T, Suyama M, Kanai Y, Shirahige K, Sasaki H, Tokunaga K, Tsuchihara K, Sugano S, Nakai K, Suzuki Y. DBTSS/DBKERO for integrated analysis of transcriptional regulation. Nucleic Acids Research, 46(D1), D229–D238, 2018. doi：10.1093/nar/gkx1001
  24. 遠藤（飛川）みのり イチゴ新品種‘恋みのり’が有する炭疽病抵抗性―Colletotrichum gloeosporioides種複合体の菌種による差異の一例―. 植物防疫, 72, 236-240, 2018. ＊
  25. Hori K, Yamada Y, Purwanto R, Minakuchi Y, Toyoda A, Hirakawa H, Sato F. Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence. Plant Cell Physiol., 59(2), 222-233, 2018. doi: 10.1093/pcp/pcx210 ＊
  26. Hirayama D, Iida T, Nakase H. The Phagocytic Function of Macrophage-Enforcing Innate Immunity and Tissue Homeostasis. Int J Mol Sci., 19, 92, 2017. doi: 10.3390/ijms19010092 ＊
  27. Aoki H, Yamamoto E, Takasawa A, Niinuma T, Yamano HO, Harada T, Matsushita HO, Yoshikawa K, Takagi R, Harada E, Tanaka Y, Yoshida Y, Aoyama T, Eizuka M, Yorozu A, Kitajima H, Kai M, Sawada N, Sugai T, Nakase H, Suzuki H. Epigenetic silencing of SMOC1 in traditional serrated adenoma and colorectal cancer. Oncotarget, 9, 4707-4721, 2017. doi: 10.18632/oncotarget.23523 ＊
  28. Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H. CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex. Scientific Reports, 7, 17873, 2017. doi：10.1038/s41598-017-18251-8 ＊
  29. Cui, X., Mino, T., Yoshinaga, M., Nakatsuka, Y., Hia, F., Yamasoba, D., Tsujimura, T., Tomonaga, K., Suzuki, Y., Uehata, T., Takeuchi, O. Regnase-1 and Roquin Nonredundantly Regulate Th1 Differentiation Causing Cardiac Inflammation and Fibrosis. The Journal of Immunology, 199(12), 4066–4077, 2017. doi：10.4049/jimmunol.1701211
  30. Ayako Suzuki, Mizuto Suzuki, Junko Mizushima-Sugano, Martin C Frith, Wojciech Makałowski, Takashi Kohno, Sumio Sugano, Katsuya Tsuchihara & Yutaka Suzuki. Sequencing and phasing cancer mutations in lung cancers using a long-read portable sequencer. DNA Research, 24(6), 585-596, 2017. doi：10.1093/dnares/dsx027
  31. Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y, and Matsushita T. Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell, 171, 1316-1325, 2017. doi：10.1016/j.cell.2017.10.018
  32. Udagawa C, Sasaki Y, Suemizu H, Ohnishi Y, Ohnishi H, Tokino T, Zembutsu H. Targeted sequencing reveals genetic variants associated with sensitivity of 79 human cancer xenografts to anticancer drugs. Exp Ther Med, 15, 1339-1359, 2018. doi: 10.3892/etm.2017.5533. ＊
  33. Ikawa, H., Chen, C.P., Sikma, M., Yoshimoto, M., Sakai, H., Tokida, T., Usui, Y., Nakamura, H., Ono, K., Maruyama, M., Watanabe, T., Kuwagata, T., and Hasegawa, T. Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-a model based on free-air CO2 enrichment. Global Change Biology, 24, 1321-1341, 2018. doi：10.1111/gcb.13981 ＊
    (プレスリリース）http://www.naro.affrc.go.jp/publicity_report/press/laboratory/niaes/080552.html
  34. Higashino T, Matsuo H, Okada Y, Nakashima H, Shimizu S, Sakiyama M, Tadokoro S, Nakayama A, Kawaguchi M, Komatsu M, Hishida A, Nakatochi M, Ooyama H, Imaki J, Shinomiya N. A common variant of MAF/c-MAF, transcriptional factor gene in the kidney, is associated with gout susceptibility. Hum Cell, 31, 10-13, 2018. doi：10.1007/s13577-017-0186-6
  35. Koyama R, Tamura M, Nakagaki T, Ohashi T, Idogawa M, Suzuki H, Tokino T, Sasaki Y. Identification and characterization of a metastatic suppressor BRMS1L as target gene of p53. Cancer Science, 108, 2413-2421, 2017. doi: 10.1111/cas.13420 ＊
  36. Yu L, Hisatsune J, Hirakawa H, Mizumachi E, Toyoda A, Yahara K, Sugai M. Complete Genome Sequence of Super Biofilm-Elaborating Staphylococcus aureus Isolated in Japan. Genome Announc., 5(41), e01043-17, 2017. doi: 10.1128/genomeA.01043-17 ＊
  37. Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J. Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell, 171, 287-304, 2017. doi：10.1016/j.cell.2017.09.030
    (プレスリリース）
    http://www.kyoto-u.ac.jp/ja/research/research_results/2017/171006_2.html
    https://www.nig.ac.jp/nig/ja/2017/10/research-highlights_ja/20171006.html
  38. Yamamoto Y, Gotoh S, Korogi Y, Seki M, Konishi S, Ikeo S, Sone N, Nagasaki T, Matsumoto H, Muro S, Hirai T, Ito I, Kohno T, Suzuki Y, Mishima M. Long-term expansion of alveolar stem cells derived from human iPS cells by forming organoids. Nat Methods., 14(11), 1097-1106, 2017. doi:10.1038/nmeth.4448
  39. Nishimura, K and Fukagawa T. An efficient method to generate conditional knockout cell lines for essential genes by combination of auxin-inducible degron tag and CRISPR/Cas9. Chromosome Res., 25, 253-260, 2017. doi：10.1007/s10577-017-9559-7
  40. Fujita, T., Kitaura, F., Yuno, M., Suzuki, Y., Sugano, S., and Fujii, H. Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line. DNA Research, 24, 537-548, 2017. doi：10.1093/dnares/dsx023
  41. Sanosaka T, Imamura T, Hamazaki N, Chai M, Igarashi K, Ideta-Otsuka M, Miura F, Ito T, Fujii N, Ikeo K, Nakashima K. DNA methylome analysis identifies transcription factor-based epigenomic signatures of multilineage competence in neural stem/progenitor cells. Cell Reports, 20, 2992, 2017. doi：10.1016/j.celrep.2017.08.086 ＊
    (プレスリリース）https://www.kyushu-u.ac.jp/ja/researches/view/171
  42. Yamazaki T, Ichihara K, Suzuki R, Oshima K, Miyamura S, Kuwano K, Toyoda A, Suzuki Y, Sugano S, Hattori M, Kawano S. Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita. Scientific Reports, 7(1), 11679, 2017. doi: 10.1038/s41598-017-11677-0 ＊
  43. Nakase H, Motoya S, Matsumoto T, Watanabe K, Hisamatsu T, Yoshimura N, Ishida T, Kato S, Nakagawa T, Esaki M, Nagahori M, Matsui T, Naito Y, Kanai T, Suzuki Y, Nojima M, Watanabe M, Hibi T; DIAMOND study group. Significance of measurement of serum trough level and anti-drug antibody of adalimumab as personalised pharmacokinetics in patients with Crohn’s disease: a subanalysis of the DIAMOND trial. Aliment Pharmacol Ther., 46, 873-882, 2017. doi: 10.1111/apt.14318. ＊
  44. Higashino T, Takada T, Nakaoka H, Toyoda Y, Stiburkova B, Miyata H, Ikebuchi Y, Nakashima H, Shimizu S, Kawaguchi M, Sakiyama M, Nakayama A, Akashi A, Tanahashi Y, Kawamura Y, Nakamura T, Wakai K, Okada R, Yamamoto K, Hosomichi K, Hosoya T, Ichida K, Ooyama H, Suzuki H, Inoue I, Merriman TR, Shinomiya N, Matsuo H. Multiple common and rare variants of ABCG2 cause gout. RMD Open, 3, e000464, 2017. doi：10.1136/rmdopen-2017-000464
  45. Abdelrahman M, El-Sayed M, Sato S, Hirakawa H, Ito SI, Tanaka K, Mine Y, Sugiyama N, Suzuki Y, Yamauchi N, Shigyo M. RNA-sequencing-based transcriptome and biochemical analyses of steroidal saponin pathway in a complete set of Allium fistulosum—A. cepa monosomic addition lines. PLoS One, 12(8), e0181784, 2017. doi：10.1371/journal.pone.0181784
  46. Ishida JK, Yoshida S, Shirasu K. Quinone oxidoreductase 2 is involved in haustorium development of the parasitic plant Phtheirospermum japonicum. Plant Signal Behav, 12, e1319029, 2017. doi：10.1080/15592324.2017.1319029 ＊
  47. Hori T, Shang WH, Hara M, Ariyoshi M, Arimura Y, Fujita R, Kurumizaka H, Fukagawa T. Association of M18BP1/KNL2 with CENP-A Nucleosome Is Essential for Centromere Formation in Non-mammalian Vertebrates. Dev Cell, 42, 181-189, 2017. doi：10.1016/j.devcel.2017.06.019
    (プレスリリース）http://www.fbs.osaka-u.ac.jp/jpn/events/achievement/hori-fukagawa-20170725/
  48. Nakagaki T, Tamura M, Kobashi K, Kobashi K, Koyama R, Fukushima H, Ohashi T, Idogawa M, Ogi K, Hiratsuka H, Tokino T, Sasaki Y. Profiling cancer-related gene mutations in oral squamous cell carcinoma from Japanese patients by targeted amplicon sequencing., Oncotarget, 8, 59113-59122, 2017. doi: 10.18632/oncotarget.19262 ＊
  49. Shotaro Wani, Hidehito Kuroyanagi. An emerging model organism Caenorhabditis elegans for alternative pre-mRNA processing in vivo. Wiley Interdiscip Rev RNA, 8, e1428, 2017. doi：10.1002/wrna.1428 ＊
  50. Li B, Qing T, Zhu J, Wen Z, Yu Y, Fukumura R, Zheng Y, Gondo Y, Shi L. A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq. Scientific Reports, 7, 4200, 2017. doi：10.1038/s41598-017-04520-z ＊
  51. Yamagishi J, Runtuwene LR, Hayashida K, Mongan AE, Thi LAN, Thuy LN, Nhat CN, Limkittikul K, Sirivichayakul C, Sathirapongsasuti N, Frith M, Makalowski W, Eshita Y, Sugano S, Suzuki Y. Serotyping dengue virus with isothermal amplification and a portable sequencer. Scientific Reports, 7, 3510, 2017. doi: 10.1038/s41598-017-03734-5 ＊
  52. Tsurusaki Y, Ohashi I, Enomoto Y, Naruto T, Mitsui J, Aida N, Kurosawa K. A novel UBE2A mutation causes X-linked intellectual disability type Nascimento. Hum Genome Var., 4, 17019, 2017. doi：10.1038/hgv.2017.19. ＊
  53. Sakiyama M, Matsuo H, Akashi A, Shimizu S, Higashino T, Kawaguchi M, Nakayama A, Naito M, Kawai S, Nakashima H, Sakurai Y, Ichida K, Shimizu T, Ooyama H, Shinomiya N. Independent effects of ADH1B and ALDH2 common dysfunctional variants on gout risk. Scientific Reports, 7, 2500, 2017. doi：10.1038/s41598-017-02528-z
  54. Yoshinaga, M., Nakatsuka, Y., Vandenbon, A., Ori, D., Uehata, T., Tsujimura, T., Suzuki, Y., Mino, T., Takeuchi, O. Regnase-1 Maintains Iron Homeostasis via the Degradation of Transferrin Receptor 1 and Prolyl-Hydroxylase-Domain-Containing Protein 3 mRNAs. Cell Reports, 19(8), 1614–1630, 2017. doi：10.1016/j.celrep.2017.05.009
    (プレスリリース）https://www.amed.go.jp/news/release_20170524.html
    http://www.kyoto-u.ac.jp/ja/research/research_results/2017/170524_1.html
    http://www.infront.kyoto-u.ac.jp/achievements/post-1846/
  55. Egashira M, Hirota Y, Shimizu-Hirota R, Saito-Fujita T, Haraguchi H, Matsumoto L, Matsuo M, Hiraoka T, Tanaka T, Akaeda S, Takehisa C, Saito-Kanatani M, Maeda KI, Fujii T, Osuga Y. F4/80+ macrophages contribute to clearance of senescent cells in the mouse postpartum uterus. Endocrinology, 158, 2344–2353, 2017. doi：10.1210/en.2016-1886 ＊
  56. Einaga N, Yoshida A, Noda H, Suemitsu M, Nakayama Y, Sakurada A, Kawaji Y, Yamaguchi H, Sasaki Y, Tokino T, Esumi M. Assessment of the quality of DNA from various formalin-fixed paraffin-embedded (FFPE) tissues and the use of this DNA for next-generation sequencing (NGS) with no artifactual mutation. PLoS One, 12, e0176280, 2017. doi: 10.1371/journal.pone.0176280 ＊
  57. Kanki Y, Nakaki R, Shimamura T, Matsunaga T, Yamamizu K, Katayama S, Suehiro JI, Osawa T, Aburatani H, Kodama T, Wada Y, Yamashita JK, Minami T. Dynamically and epigenetically coordinated GATA/ETS/SOX transcription factor expression is indispensable for endothelial cell differentiation. Nucleic Acids Res., 45, 4344-4358, 2018. doi：10.1093/nar/gkx159 ＊
  58. Fujita, T., Yuno, M., Suzuki, Y., Sugano, S., and Fujii, H. Identification of physical interactions between genomic regions by enChIP-Seq. Genes to Cells, 22, 506-520, 2017. doi：10.1111/gtc.12492 ＊
  59. Spallek, T., Melnyk, C. W., Wakatake, T., Zhang, J., Sakamoto, Y., Kiba, T., Yoshida, S., Matsunaga, S., Sakakibara, H., Shirasu, K. Inter-species hormonal control of host root morphology by parasitic plants. PNAS, 114, 5283-5288, 2017. doi：10.1073/pnas.1619078114 ＊
  60. Masahiro Uesaka, Kiyokazu Agata, Takao Oishi, Kinichi Nakashima, Takuya Imamura. Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals. BMC Genomics, 18, 285, 2017. doi：10.1186/s12864-017-3662-1 ＊
  61. Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H. and Smith, D. R. Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biology and Evolution, 9, 993-999, 2017. doi：10.1093/gbe/evx060 ＊
  62. Nakase H, Sakuma S, Fukuchi T, Yoshino T, Mohri K, Miyata K, Kumagai H, Hiwatari KI, Tsubaki K, Ikejima T, Tobita E, Zhu M, Wilson KJ, Washington K, Gore JC, Pham W. Evaluation of a novel fluorescent nanobeacon for targeted imaging of Thomsen-Friedenreich associated colorectal cancer. Int J Nanomedicine., 12, 1747-1755., 2017. doi: 10.2147/IJN.S124174. ＊
  63. Galipon J, Ishii R, Suzuki Y, Tomita M, Ui-Tei K. Differential binding of three major human ADAR isoforms to coding and long non-coding transcripts. Genes (Basel), 8, E68, 2017. doi：10.3390/genes8020068 ＊
  64. Ishikawa, A., Kusakabe, M., Ravinet, M., Yoshida, K., Makino, T., Toyoda, A. Fujiyama, A., and Kitano, J. Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes. Evolution, 71, 565-581, 2017. doi：10.1111/evo.13175 ＊
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